I am a bioinformatics software engineer.
I build

Projects

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fastq.bio

Web app to QC sequencing data

Adventures in Data Science with Bash

A book introducing data science on the command line

Ginkgo

Web tool for single-cell CNV analysis



Articles

A Tale of Two Clouds: Amazon vs. Google

An in-depth comparison of AWS and Google Cloud features and offerings

The Weird, Wondrous World of Bash Arrays

How Bash arrays can change your life

Your slide decks are zip files in disguise

PowerPoint files are really .zip files

Zero to Cloud in 1 Hour

Featured Article in php[architect] magazine

The elephant in the lab

Professorship is the alternative career for science PhDs

Build Data Analysis and Visualization Tools

Featured Article in php[architect] magazine



Talks

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How to use Bash as a full-fledged programming language

O'Reilly OSCON 2018
Portland, OR
July 17, 2018

Build scalable genomics apps on the cloud

Bay Bioinformatics Meetup
South San Francisco, CA
May 11, 2018

Zero to Cloud in 1 Hour using the Google Cloud

OpenWest 2017
Salt Lake City, UT
July 13, 2017

Deep Dive into R, for Python Developers

O'Reilly OSCON
Live Webcast
July 19, 2016

Single-Cell Sequencing: Analysis & Visualization of Copy Number Variations

Festival of Genomics
San Francisco, CA
November 3, 2015

Ginkgo: Interactive analysis and quality assessment of single-cell CNV data

Genome Informatics 2015
Cold Spring Harbor, NY
October 29, 2015

Adventures in Data Science with Bash

O'Reilly OSCON
Portland, OR
July 24, 2015

Real-time web apps using WebSockets and Node.js

OpenWest 2015
Orem, UT
May 8, 2015

Ginkgo, a cloud-based app for single-cell data analysis

Vizbi 2015
Cambridge, MA
March 24, 2015